Following the SimpleTidy GeneCoEx workflow created by Dr. Chenxin Li for the analysis of co-expression networks.
Importing the necessary libraries for the analysis:
Importing the TPM gene expression matrix. It was generated by running Salmon on the RNA-seq data from the Kremling et al. (2018) paper and using the index of Maize v5 as the reference transcriptome. The matrix was filtered by TPM and coefficient of variation (CV) values.